Japanese Lamprey Genome Project IMCB, ASTAR, Singapore
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Comprises 67,420 contigs which are assembled into 21,203 scaffolds and cover 937 Mb of the 1-Gb genome of elephant shark. The N50 contig length is 46. 6 kb whereas the N50 scaffold length is 4. Queries to eshark at imcb.
Genome project was initiated in 1989 by Sydney Brenner and his colleagues Greg Elgar, Sam Aparicio and Byrappa Venkatesh.
First step to build zoologically informative phylogenetic trees. Allows you to collect homologs of the sequence of your interest. Those sequences can be passed on to the web server for sophisticated multiple alignment, and then to tree building. This initial process one can perform here is just like collecting leaves. Sequence in the fasta format.
Our original Arctic lamprey gene model included. 0 released by the group of Dr. For your use in RNA-seq, ChIP-seq, ATAC-seq read mapping, etc.
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I discovered that this domain is weilding the Apache/2.4.6 (CentOS) PHP/5.4.16 mod_wsgi/3.4 Python/2.7.5 server.PAGE TITLE
Japanese Lamprey Genome Project IMCB, ASTAR, SingaporeDESCRIPTION
IMCB Comparative Genomics Lab. Elephant Shark Genome Project. We are using the Japanese lamprey Lethenteron japonicum. Family Petromyzontidae as a model lamprey genome because of its relatively small genome 1.6 Gb. Our preliminary studies indicated that the Japanese lamprey contains approximately 20 repetitive sequences compared to 35 repetitive sequences in the 2.3 Gb genome of the sea lamprey Petromyzon marinus. Singapore and the Okinawa Institute of Science and Technology Graduate University.CONTENT
This domain jlampreygenome.imcb.a-star.edu.sg had the following on the site, "We are using the Japanese lamprey Lethenteron japonicum." We observed that the webpage said " Family Petromyzontidae as a model lamprey genome because of its relatively small genome 1." It also stated " Our preliminary studies indicated that the Japanese lamprey contains approximately 20 repetitive sequences compared to 35 repetitive sequences in the 2. 3 Gb genome of the sea lamprey Petromyzon marinus. Singapore and the Okinawa Institute of Science and Technology Graduate University." The header had japanese lamprey as the highest ranking keyword. It was followed by japanese, lamprey, and genome which isn't as ranked as highly as japanese lamprey. The next words the site used was project. Lethenteron was also included but could not be viewed by web engines.SEEK MORE DOMAINS
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